ModMashup.jl
Project Goal and Motivations
This project is a part of Google summer of code 2017 program. The aim of the project is to reimplement GeneMANIA in Julia to optimize netDx for high-performance computing.
Why called ModMashup?
Because the implementation of GeneMANIA in this package is different. We get intuitive from mashup to replace linear regression part of GeneMANIA for high-performance computing. In short, mashup learns patient embedding and we use this information to derivate network weights.
Index
Functions
ModMashup.label_propagation!
ModMashup.network_integration!
ModMashup.network_integration!
ModMashup.fit!
ModMashup.fit!
ModMashup.build_index
ModMashup.get_combined_network
ModMashup.get_score
ModMashup.get_weights
ModMashup.load_net
ModMashup.parse_query
ModMashup.parse_target
ModMashup.pca
ModMashup.rwr
ModMashup.searchdir